Skip to Main Content

The University of Tennessee

The Department of Mathematics

Frequently Used Tools:




Main Navigation:

PUBLICATION LIST

(Note: Some PDF downloads may require journal subscription.)

Prince, J.M., Levy, R.M., Bartels, J., Baratt, A., Kane J.M. III, Lagoa, C., Rubin, J., Day, J., Wei, J., Fink, M.P., Goyert, S.M., Clermont, G., Billiar, T.R., Vodovotz, Y., 2006. In silico and in vivo approach to elucidate the inflammatory complexity of CD14-deficient mice. Mol. Med. 12(4-6):88-96.doi: 10.2119/2006-00012.Prince
PDF download

Vodovotz, Y., Chow, C.C., Bartels, J., Lagoa, C., Prince, J.M., Levy, R.M., Kumar, R., Day, J., Rubin, J., Constantine, G., Billiar, T., Fink, M., Clermont, G., 2006. In silico models of acute inflammation in animals. Shock, 26(3):235-244.
PDF download

Reynolds, A., Rubin, J., Clermont, G., Day, J., Ermentrout, B., 2006. A reduced mathematical model of the acute inflammatory response: I. Derivation of the model and analysis of anti-inflammation. J. Theor. Biol. 242, 220-236. doi:10.1016/j.jtbi.2006.02.016
PDF download

Day, J., Rubin, J., Vodovotz, Y., Chow, C.C., Reynolds, A., Clermont, G., 2006. A reduced mathematical model of the acute inflammatory response: II. Capturing scenarios of repeated endotoxin administration. J. Theor. Biol. 242, 237-256. doi:10.1016/j.jtbi.2006.02.015
PDF download

Day, J., Friedman, A., Schlesinger, L.S., 2009a. Modeling the immune rheostat of macrophages in the lung in response to infection. Proc. Natl Acad Sci USA, 106(27), 11246-11251. doi:10.1073/pnas.0904846106
PDF download

Day, J., Rubin, J., Chow, C.C., 2009b. Competition between transients in the rate of approach to a fixed point. SIAM J. Appl. Dyn. Syst. 8(4), 1523-1563. doi: 10.1137/080718929 (in SIADS Top 20 Most Downloaded Articles! Nov '09 - Mar '10)
PDF download

Day, J., Schlesinger, L.S., Friedman, A., 2010. Tuberculosis research: Going forward with a powerful "Translational Systems Biology" approach. Tuberculosis, (Edinb), 90(1):7-8. doi:10.1016/j.tube.2009.12.002.
PDF download

Day, J., Rubin, J., Clermont, G., 2010. Using nonlinear model predictive control to find optimal therapeutic strategies to modulate inflammation. Math. Biosci. Eng. 7(4):739-763. doi:10.3934/mbe.2010.7.739
PDF download

Day, J., Friedman, A., Schlesinger, L.S., 2011. Modeling the host response to inhalation anthrax. J Theor Biol. 276(1):199-208. doi:10.1016/j.jtbi.2011.01.054
PDF download

O. Bara, J. Day, and S. Djouadi. 2013. Nonlinear State Estimation for Complex Immune Responses. Proceedings of the 52nd IEEE Conference on Decision and Control. pgs. 3373-3378. Florence, Italy. doi: 10.1109/CDC.2013.6760399
PDF download

J. Day and E.K. LeGrand. 2015. Synergy of local, regional, and systemic non-specific stressors for host defense against pathogens. J Theor Biol. 367:39-48. doi:10.1016/j.jtbi.2014.11.013
PDF download

C. Noecker, K. Schaefer, K. Zaccheo, Y. Yang, J. Day, V. Ganusov. 2015. Simple mathematical models do not accurately predict early SIV dynamics. Viruses. 7(3):1189-1217. doi:10.3390/v7031189
PDF download

G. Zitelli, S. Djouadi, and J. Day. 2015. Combining robust state estimation with nonlinear model predictive control to regulate the acute inflammatory response to pathogen. Math Biosc and Eng. 12(5): 1127-1139. doi:10.3934/mbe.2015.12.1127
PDF download

O. Bara, J. Day, and S. Djouadi. 2015. Parameter Estimation for Nonlinear Immune Response Model using EM. Proceedings of the SIAM Conference on Control & Its Applications. pgs. 54-59. July 8-10, Paris, France. doi:10.1137/1.9781611974072.8
PDF download

J. Day, D. M. Metes, Y. Vodovotz. 2015. Mathematical modeling of early cellular innate and adaptive immune responses to ischemia/reperfusion injury and solid organ allotransplantation. Frontiers in Immunology. Alloimmunity and Transplantation. 6:1-19. doi:10.3389/fimmu.2015.00484
in Research Topic: Transplant rejection and tolerance: advancing the field through integration of computational and experimental investigations.
PDF download

R.A. Namas, Q. Mi, R. Namas, K. Almahmoud, A.M. Zaaqoq, O. Abdul-Malak, N. Azhar, J. Day, A. Abboud, R. Zamora, T.R. Billiar, Y. Vodovotz. 2015. Insights into the Role of Chemokines, Damage-Associated Molecular Patterns, and Lymphocyte-derived Mediators from Computational Models of Acute Inflammation. Antioxidant Redox Signaling. 23(17): 1370-1387. doi: 10.1089/ars.2015.6398
PDF download

O. Bara, J. Day, and S. Djouadi. 2015. Optimal Control of an Inflammatory Immune Response Model. Proceedings of the 54th IEEE Conference on Decision and Control. pgs. 1283-1288. Osaka, Japan. doi: 10.1109/CDC.2015.7402388
PDF download

E.K. LeGrand and J. Day. 2016. Self-harm to Preferentially Harm the Pathogens Within: Non-specific Stressors in Innate Immunity. Proceedings of the Royal Society B. 283:20160266. doi: 10.1098/rspb.2016.0266
PDF download

O. Bara, J. Day, and S. Djouadi. 2016. Immune Therapy using Optimal Control with L1 Type Objective. American Control Conference Proceedings. Pgs. 4895-4900. July 6-8, Boston, MA. doi: 10.1109/ACC.2016.7526128
PDF download

B.R. Pantha, J. Day, S. Lenhart. 2016. Optimal Control Applied in an Anthrax Epizootic Model. Journal of Biological Systems. 24: 495-517. doi: 10.1142/S021833901650025X
PDF download

O. Bara, M. Fliess, C. Join, J. Day, & SM Djouadi. (2016). Model-free immune therapy: A control approach to acute inflammation. Proceedings of the European Control Conference. Pgs. 2102-2107. Aalborg, DENMARK.
PDF Download

Y. Vodovotz, A. Xia, E. Read, J. Bassaganya-Riera, D.A. Hafler, E. Sontag, J. Wang, J.S. Tsang, J.D. Day, S. Kleinstein, A.J.Butte, M.C. Altman, R. Hammond, and S.C. Sealfon. 2017. Solving Immunology? Trends in Immunology. 38(2):116-127. doi: 10.1016/j.it.2016.11.006.
PDF download

B. Stephenson, C. Lanzas, S. Lenhart, and J. Day. 2017. Optimal Control of Vaccination Rate in an Epidemiological Model of Clostridium difficile Transmission. Journal of Mathematical Biology. doi:10.1007/s00285-017-1133-6 [Epub ahead of print]
PDF download

O. Bara, S.M. Djouadi, J.D. Day, and S. Lenhart. 2017. Immune Therapeutic Strategies Using Optimal Controls with L1 and L2 Type Objectives. Mathematical Biosciences. 290:9-21. doi: 10.1016/j.mbs.2017.05.010

Submitted Manuscripts:

O. Bara, M. Fliess, C. Join, J. Day, and S.M. Djouadi. (submitted 2017) Towards a model-free feedback control synthesis for treating acute inflammation.

S. Chen, S. Lenhart, J. Day, C. Lee, M. Dulin, and C. Lanzas. (In Revision 2017) Pathogen Transfer through Environment-Host Contact: An Agent-Based Queueing Theoretic Framework

B. Pantha, S. Lenart, A. Cross, and J.D. Day (Submitted 2017) Early Host-Pathogen Interaction in an Inhalational Anthrax Infection



Border Photo

Contact Info:

Email Address:
judyday@utk.edu

Office Address:
212 Ayres Hall

Mailing Address:
Department of Mathematics
The University of Tennessee
227 Ayres Hall
1403 Circle Dr
Knoxville, TN 37996-1320

Phone and Fax Numbers:
Phone: (865) 974-8419
Fax: (865) 974-6576